labelset_parser.LabelSetParser

labelset_parser.LabelSetParser(self, parser=None, parser_path=None)

A labelset parser object

Parameters

Name	Type	Description	Default
`parser`	dict	A dictionary defining the parser rules. Defaults to None.	`None`
`parser_path`	Path	A path to a yaml file definition of the parser. Defaults to None.	`None`

Name	Description
apply_parser	Apply the parser to a single interval
map_parser	Map the parser to an entire sequence tier.
read_parser	Read in a yaml file defining the parser
validate_parser	Validate wellformedness of parser

labelset_parser.LabelSetParser.apply_parser(obj)

Apply the parser to a single interval

Name	Type	Description	Default
`obj`	SequenceInterval	A SequenceInterval	required

labelset_parser.LabelSetParser.map_parser(obj)

Map the parser to an entire sequence tier.

Name	Type	Description	Default
`obj`	SequenceTier	A SequenceTier	required

labelset_parser.LabelSetParser.read_parser(path)

Read in a yaml file defining the parser

Name	Type	Description	Default
`path`	Path	Path to the yaml file definition.	required

labelset_parser.LabelSetParser.validate_parser(parser)

Validate wellformedness of parser

Name	Type	Description	Default
`parser`	dict	parser dictionary	required

Type	Description
Exception	Any errors raised by the validator